The R package decemedip is a novel computational paradigm developed for inferring the relative abundances of cell types and tissues from tissue bulk or circulating cell-free DNA (cfDNA) measure by methylated DNA immunoprecipitation sequencing (MeDIP-Seq). This paradigm allows using reference data from other technologies such as microarray or WGBS.
Installation
You can install the development version of decemedip in R from GitHub with:
# install.packages("devtools")
devtools::install_github("nshen7/decemedip")